The research project on Innovative Measurement and Analysis, in which we are participating as co-researchers, has been accepted by the funding program JST CREST.
Takashi Morikura was selected to deliver talk at 22nd International Conference on Systems Biology. His talk title was "Automatic quantitative evaluation for the performance of in vitro testis tissues using anomaly detection-based ensemble model with error-correcting output codes".
A paper entitled: "Titanium Culture Vessel Presenting Temperature Gradation for the Thermotolerance Estimation of Cells" is published in Cyborg and Bionic Systems.
A commentary on the paper published in Scientific Reports by Ryo Joel Nakatani, Masahiro Itabashi, et al. was posted on PodScholars.
A paper entitled: "SBML level 3 package: spatial processes, version 1, release 1" is published in Journal of Integrative Bioinformatics.
Our paper entitled: "Intercellular interaction mechanisms promote diversity in intracellular ATP concentration in Escherichia coli populations." by Ryo Joel Nakatani, Masahiro Itabashi et al. is published in Scientific Reports.
A paper entitled: "BioSimulators: a central registry of simulation engines and services for recommending specific tools" is published in Nucleic Acids Research.
The second phase of ABiS(Advanced Bioimaging Support) is about to begin!
A paper entitled: "High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance" is published in NAR Genomics and Bioinformatics.
A paper entitled: "COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms" is published in Molecular Systems Biology.
A paper entitled: "Cas9-mediated genome editing reveals a significant contribution of calcium signaling pathways to anhydrobiosis in Pv11 cells" is published in Scientific Reports.
A paper entitled: "Genome-Wide Role of HSF1 in Transcriptional Regulation of Desiccation Tolerance in the Anhydrobiotic Cell Line, Pv11" is published in International Journal of Molecular Sciences.
The research project on Mathematical Information Platform, in which we are participating as co-researchers, has been accepted by the funding program JST CREST.
Our paper entitled: "Direct cell counting using macro-scale smartphone images of cell aggregates" by Chikahiro Imashiro, Yuta Tokuoka et al. is published in IEEE Access.
A paper entitled: "SBML Level 3: an extensible format for the exchange and reuse of biological models" is published in Molecular Systems Biology.
A paper entitled: "COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms" is published in Scientific Data.
Yuta Tokuoka and Akira Funahashi were invited to deliver talk at Grant-in-Aid for Scientific Research on Innovative Areas- Platforms for Advanced Technologies and Research Resources "Advanced Bioimaging Support(ABiS)" Training Course (新学術領域研究・学術研究支援基盤形成 「先端バイオイメージング支援プラットフォーム」AIによる生物画像解析トレーニングコース). Their talk title was "機械学習による画像分類(in Japanese)".
Shori Nishimoto was invited to deliver talk at School of Veterinary Medicine and Science, University of Nottingham. His talk title was "Deep Learning Based Tissue Analysis for Predicting Cancer Outcomes Accounting for Intratumoral Heterogeneity".
Akira Funahashi was invited to deliver talk at School of Veterinary Medicine and Science, University of Nottingham. His talk title was "Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development".
Mikiko Motomuro was selected to deliver talk at The Seventh Annual Winter Q-bio meeting. Her talk title was "Mechanical Modeling of Cell Migration During the Early Embryogenesis of C. elegans to Reveal the Mechanism for Controlling Cell Arrangement".
Noriko Hiroi was invited to deliver talk at Keio University International Symposium on Advanced Technologies for Mechano-biology and Regenerative Medicine. Her talk title was "Quantitative analysis of sensitivity to Wnt3a gradient in determination of the pole-to-pole axis of mitotic cells by using a microfluidic device".
We had "International Workshop on Quantitative Biology 2017" at Keio University.
A review entitled: "The principles of whole-cell modeling" by Jonathan R Karr et al. is published in Current Opinion in Microbiology.
A review entitled: "Bioimage Analysis for Quantitative Biology and Its Application to Mammalian Embryogenesis (in Japanese)" by Tetsuya J Kobayashi et al. is published in Medical Imaging Technology.
A paper entitled: "A proteomic study of mitotic phase-specific interactors of EB1 reveals a role for SXIP-mediated protein interactions in anaphase onset" is published in Biology Open.
We had "International Workshop on Quantitative Biology 2013" at Osaka University.
A paper entitled: "Automated tracking of mitotic spindle pole positions shows that LGN is required for spindle rotation but not orientation maintenance" is published in Cell Cycle.
A paper entitled: "The systems biology simulation core algorithm" is published in BMC Systems Biology.
Akira Funahashi and Noriko Hiroi were invited to organize a two days workshop on CellDesigner at Monash University, Australia.
A General Commentary Article entitled: "Meeting Report of the International Workshop on Quantitative Biology 2012: Mesoscopic and microscopic worlds meet." by Viji M. Draviam et al. is published in Frontiers in Physiology (Systems Biology).
We had "5th Annual Meeting of The Japanese Society for Quantitative Biology (Q-BioJP)" at the University of Tokyo.
We had "International Workshop on Quantitative Biology 2012" at the University of Tokyo.
A paper entitled: "Software support for SBGN maps: SBGN-ML and LibSBGN" by Martijn P. van Iersel et al. is published in Bioinformatics.
A paper entitled: "BioPAX support in CellDesigner" by Huaiyu Mi et al. is published in Bioinformatics.