jp.ac.keio.bio.fun.xitosbml.xitosbml

Class MainParametricSpatial

java.lang.Object

jp.ac.keio.bio.fun.xitosbml.xitosbml.MainSpatial

jp.ac.keio.bio.fun.xitosbml.xitosbml.MainParametricSpatial

All Implemented Interfaces:

ij.plugin.PlugIn

public class MainParametricSpatial
extends MainSpatial

The class MainParametricSpatial, which implements "run Spatial Parametric SBML plugin" function. Date Created: Feb 21, 2017

Author:

Kaito Ii <ii@fun.bio.keio.ac.jp>, Akira Funahashi <funa@bio.keio.ac.jp>

Field Summary

Fields inherited from class jp.ac.keio.bio.fun.xitosbml.xitosbml.MainSpatial

document, hashSampledValue, imgexp, model, spatialplugin, spImg, viewer

Constructor Summary

Constructors

Constructor and Description
MainParametricSpatial()

Method Summary

Modifier and Type	Method and Description
void	run(String arg) Overrides ij.plugin.PlugIn#run(java.lang.String).

Methods inherited from class jp.ac.keio.bio.fun.xitosbml.xitosbml.MainSpatial

addSBases, computeImg, gui, print, showDomainStructure, showStep, visualize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MainParametricSpatial

public MainParametricSpatial()

Method Detail

run

public void run(String arg)

Overrides ij.plugin.PlugIn#run(java.lang.String). A dialog for specifying the correspondence between the image and the region in the cell will be displayed. The specified image is read and the following process is performed. 1. Interpolate an image if it is a Z-stack image (3D image) 2. Fill holes (blank pixels) in the image by morphology operation if exists 3. Export generated image to spatial parametric SBML

Parameters:

arg - name of the method defined in plugins.config