jp.ac.keio.bio.fun.xitosbml.image

Class Interpolator

java.lang.Object

jp.ac.keio.bio.fun.xitosbml.image.Interpolator

public class Interpolator
extends Object

The class Interpolator, which provides interpolation operations for Z-stack images. If the voxel size of each x, y and z axis is not the same, then apply interpolation to the spatial image so that the voxel size of each axis will be the same. Date Created: Feb 21, 2017

Author:

Kaito Ii <ii@fun.bio.keio.ac.jp>, Akira Funahashi <funa@bio.keio.ac.jp>

Constructor Summary

Constructors

Constructor and Description
Interpolator() Instantiates a new interpolator.
Interpolator(SpatialImage spImg) Instantiates a new interpolator with given spatial image.

Method Summary

Modifier and Type	Method and Description
ij.ImagePlus	getInterpolatedImage() Gets the interpolated image object.
void	interpolate(HashMap<String,ij.ImagePlus> hashdomFile) Interpolate given set of ImageJ image objects (as hashmap of domain files, HashMap<String, ImagePlus>).
ij.ImagePlus	interpolate(ij.ImagePlus imagePlus) Interpolate given image object and return the interpolated image object.
SpatialImage	interpolate(SpatialImage spImg) Interpolate given spatial image object and return the interpolated spatial image object.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Interpolator

public Interpolator()

Instantiates a new interpolator.

Interpolator

public Interpolator(SpatialImage spImg)

Instantiates a new interpolator with given spatial image.

Parameters:

spImg - the spatial image

Method Detail

interpolate

public ij.ImagePlus interpolate(ij.ImagePlus imagePlus)

Interpolate given image object and return the interpolated image object.

Parameters:

imagePlus - the ImageJ image object

Returns:

the interpolated image object

interpolate

public SpatialImage interpolate(SpatialImage spImg)

Interpolate given spatial image object and return the interpolated spatial image object.

Parameters:

spImg - the spatial image object

Returns:

the interpolated spatial image object

interpolate

public void interpolate(HashMap<String,ij.ImagePlus> hashdomFile)

Interpolate given set of ImageJ image objects (as hashmap of domain files, HashMap<String, ImagePlus>). The value of given hashmap of domain files will be replaced by the interpolated image object.

Parameters:

hashdomFile - the hashmap of domain file. HashMap<String, ImagePlus>

getInterpolatedImage

public ij.ImagePlus getInterpolatedImage()

Gets the interpolated image object.

Returns:

the interpolated image as ImageJ image object