jp.ac.keio.bio.fun.xitosbml.image

Class ImageEdit

java.lang.Object

jp.ac.keio.bio.fun.xitosbml.image.ImageEdit

public class ImageEdit
extends Object

The class ImageEdit, which provides several image processing filters to add a membrane between two different domains if exists. Date Created: Feb 21, 2017

Author:

Kaito Ii <ii@fun.bio.keio.ac.jp>, Akira Funahashi <funa@bio.keio.ac.jp>

Constructor Summary

Constructors

Constructor and Description
ImageEdit(SpatialImage spImg) Instantiates a new image edit with given spatial image object.

Method Summary

Modifier and Type	Method and Description
void	addMembrane() Adds a membrane between two different domains.
void	countDomain() Count number of domains in each domain types and store the number to the hashmap (hashDomainNum<String domain type, Integer count number>).
void	createMembrane() Creates the membrane.
void	domtype(HashMap<Integer,Integer> num) Create hashmap of count number of labels and set the value with given hashmap of pixels.
void	label() Set the label of each pixel to the 1D array of labels (matrix).

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ImageEdit

public ImageEdit(SpatialImage spImg)

Instantiates a new image edit with given spatial image object.

Parameters:

spImg - the spatial image object

Method Detail

domtype

public void domtype(HashMap<Integer,Integer> num)

Create hashmap of count number of labels and set the value with given hashmap of pixels.

Parameters:

num - the hashmap of pixels (HashMap<Integer, Integer>).

label

public void label()

Set the label of each pixel to the 1D array of labels (matrix). After the labels are set to all pixels, then count the number of labels and set to the hashmap of count number of labels.

createMembrane

public void createMembrane()

Creates the membrane.

countDomain

public void countDomain()

Count number of domains in each domain types and store the number to the hashmap (hashDomainNum<String domain type, Integer count number>).

addMembrane

public void addMembrane()

Adds a membrane between two different domains.